PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000301666
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 629aa    MW: 68044.8 Da    PI: 7.3585
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000301666genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30371429259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  MDP0000301666 371 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 429
                    7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-33355431IPR003657WRKY domain
SuperFamilySSF1182901.57E-27363431IPR003657WRKY domain
PROSITE profilePS5081129.516365431IPR003657WRKY domain
SMARTSM007741.5E-36370430IPR003657WRKY domain
PfamPF031062.8E-26372429IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MDKGWGLTLD SDSFGYLLNK PPTAAVKLDH HNNKRSSFFG GERMFQGMEF PVKLGRREEQ  60
DASQPSNDNN RMVVDEVDFF SDRKNKLNTN STDDHHQDSK SNGAVSVKKE NWTGLDVNTG  120
LQLVTANTGS DQSMVDDGIS SDHGVNKRAK NHEIKVEFSI FRLMVYSVVG VDYDXQLAQL  180
QVEVQRMNAE NQRLKEMLGQ VTNNYSALQM HLAAVVQRQN HTTAAPADXR SQLDHDQNAE  240
AKSDQEKKQG LVPRQFLNLG PRATAETTDD QVSNSSSEAR TGSASPPQNI NEVAKNDQIG  300
PLDPPNSNNF RDGKRVGGDE SPESQSQGWV PNKVPKLNNS AAPKPIDQST EATMRKARVS  360
VRARSEAPMI TDGCQWRKYG QKMAKGNPCP RAYYRCTMAV GCPVRKQVQR CAEDRTILIT  420
TYEGNHNHPL PPAAMAMAST TTAAASMLLS GSMASADGMN MNPNNLLARA ILPCSSSVAT  480
ISASAPFPTV TLDLTTSPLQ FQRPNTPFQI PNFPGQPQSF GAASQQLPQG FGQALYNQSK  540
FSGLQLSQDL MGSTSSQQQQ MQQTQSSSFA DTVSAITADP SFTAALAAAI TSIIGGGAHP  600
SNNNNSASTT SNNSTGANSN KNISSFPGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22357433176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.112010.0bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1129050.0JX112905.1 Malus hupehensis WRKY transcription factor 42 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364089.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9C5191e-156WRKY6_ARATH; WRKY transcription factor 6
TrEMBLV9MH480.0V9MH48_9R
STRINGPOPTR_0004s00890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-133WRKY family protein